protGear: A protein microarray data pre-processing suite

Data Pre-processing in Microarray Gene Expression Profiling

DNA microarray has become a powerful tool for researchers to simultaneously monitor the expression patterns of thousands of genes during cellular differentiation and response (DeRisi et al., 1997; Brown and Botstein, 1999; Young, 2000). With the development of the technology, more and more data are available for further analysis and the challenge now is to make sense out of such massive data se...

A suite of Perl modules for handling microarray data

UNLABELLED We describe PerlMAT, a Perl microarray toolkit providing easy to use object-oriented methods for the simplified manipulation, management and analysis of microarray data. The toolkit provides objects for the encapsulation of microarray spots and reporters, several common microarray data file formats and GAL files. In addition, an analysis object provides methods for data processing, a...

cDNA Microarray Data Normalization

TM4 microarray software suite.

Powerful specialized software is essential for managing, quantifying, and ultimately deriving scientific insight from results of a microarray experiment. We have developed a suite of software applications, known as TM4, to support such gene expression studies. The suite consists of open-source tools for data management and reporting, image analysis, normalization and pipeline control, and data ...

Analysis of Pre-processing and Post-processing Methods and Using Data Mining to Diagnose Heart Diseases

Today, a great deal of data is generated in the medical field. Acquiring useful knowledge from this raw data requires data processing and detection of meaningful patterns and this objective can be achieved through data mining. Using data mining to diagnose and prognose heart diseases has become one of the areas of interest for researchers in recent years. In this study, the literature on the ap...